That was fantastic! Knowing nothing of Gnosticism I can't really nitpick anything, but if the comparisons are true you have done a great job of putting the pieces together in a way that makes sense.

My personal theory was that, the aliens were her parents, but when I saw her change into the alien herself I had to drop that one.. So, then I had two mysteries on my hands. Who were her parents, and who was the alien. Well, with a sufficient answer for who the alien was, who were her parents?

Her father, from the very beginning, encouraged her to go be apart of the wired. He thought it was another world, and seemed to have dropped endless amounts of money to get her to the point she needed to be to connect to the wired completely. Her father also acknowledged that she and he are separate entities, but he loved her anyway. So, was her father just a human who had been sent there to protect let until she was old enough to discover her true identity, and facilitate her in any way he could? Was he something more? Her parents always seemed so distant and uninterested, but there were moments where I felt her father wanted to be a father, but just didn't know how.