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The exact geographical location (in terms of Link's physical position) is somewhere between Holodrum, Labrynna, and Hyrule. Popular theory is that it's between east and west greater hyrule. There's a theory that someone posted which I particularly like, that speculates that Koholint (the island in Link's Awakening) was actually "sucked up" and would be east greater hyrule. There's a lot pointing to it, but nothing officially confirmed. Also, Koholint itself, being a dream, is based on LTTP's hyrule. The dev reason was due to it originally going to be a remake, but then it became it's own game.
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